Format

Send to:

Choose Destination

Hepacam2 HEPACAM family member 2 [ Mus musculus (house mouse) ]

Gene ID: 101202, updated on 23-May-2018

Summary

Official Symbol
Hepacam2provided by MGI
Official Full Name
HEPACAM family member 2provided by MGI
Primary source
MGI:MGI:2141520
See related
Ensembl:ENSMUSG00000044156 Vega:OTTMUSG00000042625
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI987662
Expression
Biased expression in colon adult (RPKM 18.5), large intestine adult (RPKM 13.0) and 5 other tissues See more
Orthologs

Genomic context

See Hepacam2 in Genome Data Viewer
Location:
6; 6 A1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (3457089..3498320, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (3407089..3444498, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 384 pseudogene Neighboring gene sterile alpha motif domain containing 9-like Neighboring gene VPS50 EARP/GARPII complex subunit Neighboring gene calcitonin receptor Neighboring gene microRNA 653

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
centrosome cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centrosome cycle ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
centrosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centrosome ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
midbody IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
midbody ISO
Inferred from Sequence Orthology
more info
 
spindle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spindle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
HEPACAM family member 2
Names
mitotic kinetics regulator

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178899.5NP_849230.1  HEPACAM family member 2 precursor

    See identical proteins and their annotated locations for NP_849230.1

    Status: PROVISIONAL

    Source sequence(s)
    AC022453
    Consensus CDS
    CCDS39414.1
    UniProtKB/Swiss-Prot
    Q4VAH7
    Related
    ENSMUSP00000058882.7, OTTMUSP00000062987, ENSMUST00000049985.14, OTTMUST00000112284
    Conserved Domains (3) summary
    smart00408
    Location:165227
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:260333
    IG_like; Immunoglobulin like
    cl11960
    Location:41143
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    3457089..3498320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321287.1XP_017176776.1  HEPACAM family member 2 isoform X3

    Conserved Domains (2) summary
    smart00408
    Location:89151
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:184257
    IG_like; Immunoglobulin like
  2. XM_006504960.2XP_006505023.1  HEPACAM family member 2 isoform X3

    See identical proteins and their annotated locations for XP_006505023.1

    Conserved Domains (2) summary
    smart00408
    Location:89151
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:184257
    IG_like; Immunoglobulin like
  3. XM_006504958.3XP_006505021.1  HEPACAM family member 2 isoform X2

    Conserved Domains (3) summary
    smart00408
    Location:164226
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:259332
    IG_like; Immunoglobulin like
    cl11960
    Location:40142
    Ig; Immunoglobulin domain
  4. XM_006504957.2XP_006505020.1  HEPACAM family member 2 isoform X1

    Conserved Domains (3) summary
    smart00408
    Location:166228
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:261334
    IG_like; Immunoglobulin like
    cl11960
    Location:45133
    Ig; Immunoglobulin domain
Support Center