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afap1 actin filament associated protein 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101172963, updated on 13-Oct-2018

Summary

Gene symbol
afap1
Gene description
actin filament associated protein 1
See related
Ensembl:ENSORLG00000020781
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs

Genomic context

See afap1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 18 NC_019876.2 (30713156..30835563)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095203.1 (637..132846, complement)

Chromosome 18 - NC_019876.2Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 5A Neighboring gene mitotic arrest deficient 2 like 1 Neighboring gene uncharacterized LOC111949318 Neighboring gene arachidonate 15-lipoxygenase B-like

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019876.2 Reference ASM223467v1 Primary Assembly

    Range
    30713156..30835563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011473453.3XP_011471755.1  actin filament-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011471755.1

    Conserved Domains (2) summary
    cd13306
    Location:144249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:340439
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
  2. XM_011473451.3XP_011471753.1  actin filament-associated protein 1 isoform X1

    Related
    ENSORLP00000025739.2, ENSORLT00000025740.2
    Conserved Domains (3) summary
    cd13306
    Location:157262
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:353452
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    pfam00169
    Location:173262
    PH; PH domain
  3. XM_020701974.2XP_020557633.1  actin filament-associated protein 1 isoform X2

    Conserved Domains (2) summary
    cd13306
    Location:144249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:340439
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
  4. XM_011473454.3XP_011471756.1  actin filament-associated protein 1 isoform X3

    Related
    ENSORLP00000027634.1, ENSORLT00000040533.1
    Conserved Domains (3) summary
    cd13306
    Location:157262
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:353452
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    pfam00169
    Location:173262
    PH; PH domain
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