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bach1b BTB and CNC homology 1, basic leucine zipper transcription factor 1 b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101171022, updated on 12-Sep-2024
Gene symbol
bach1b
Gene description
BTB and CNC homology 1, basic leucine zipper transcription factor 1 b
See related
EnsemblRapid:ENSORLG00000004475
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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See bach1b in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (11092256..11097606)
102 previous assembly ASM31367v1 (GCF_000313675.1) 14 NC_019872.1 (11940706..11946060)

Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, kainate 1a Neighboring gene map3k7 C-terminal like Neighboring gene uncharacterized LOC110016373 Neighboring gene RAB38b, member of RAS oncogene family Neighboring gene glutamate receptor, metabotropic 5a Neighboring gene uncharacterized LOC110016374

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcription regulator protein BACH1

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019872.2 Reference ASM223467v1 Primary Assembly

    Range
    11092256..11097606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004076215.4 → XP_004076263.2  transcription regulator protein BACH1

    UniProtKB/TrEMBL
    A0A3P9M551, H2LI00, H2LI07
    Related
    ENSORLP00000005625.2, ENSORLT00000005626.3
    Conserved Domains (4) summary
    smart00225
    Location:40 → 132
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14686
    Location:577 → 628
    bZIP; coiled coil [structural motif]
    pfam00651
    Location:29 → 132
    BTB; BTB/POZ domain
    cl21462
    Location:568 → 638
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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Research Materials