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acod1 aconitate decarboxylase 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101169074, updated on 8-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
EnsemblRapid:ENSORLG00000030151
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 21 NC_019879.2 (8410653..8413361)
102 previous assembly ASM31367v1 (GCF_000313675.1) 21 NC_019879.1 (7531497..7534204)

Chromosome 21 - NC_019879.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110017408 Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene uncharacterized LOC101161680 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene restin homolog Neighboring gene restin homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019879.2 Reference ASM223467v1 Primary Assembly

    Range
    8410653..8413361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004081566.4 → XP_004081614.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A3B3IGX4, A0A3P9JHU4
    Related
    ENSORLP00000043171.1, ENSORLT00000030134.2
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 446
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

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