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LOC101165945 arachidonate 15-lipoxygenase B-like [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101165945, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101165945
Gene description
arachidonate 15-lipoxygenase B-like
See related
EnsemblRapid:ENSORLG00000006725
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC101165945 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 1 NC_019859.2 (15941857..15953154)
102 previous assembly ASM31367v1 (GCF_000313675.1) 1 NC_019859.1 (15839413..15848007)

Chromosome 1 - NC_019859.2Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase, C-terminal domain containing Neighboring gene uncharacterized LOC110014447 Neighboring gene nephronectin a Neighboring gene TBC1 domain containing kinase Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1a Neighboring gene dickkopf WNT signaling pathway inhibitor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arachidonate 15-lipoxygenase B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019859.2 Reference ASM223467v1 Primary Assembly

    Range
    15941857..15953154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023957360.1 → XP_023813128.1  arachidonate 15-lipoxygenase B-like isoform X1

    UniProtKB/TrEMBL
    A0A3B3HQA3, H2N0U6
    Related
    ENSORLP00000033967.1, ENSORLT00000035939.2
    Conserved Domains (2) summary
    cl00011
    Location:4 → 118
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl27717
    Location:229 → 661
    Lipoxygenase

  2. XM_023957366.1 → XP_023813134.1  arachidonate 15-lipoxygenase B-like isoform X2

    UniProtKB/TrEMBL
    A0A3B3HG34, H2N0U6
    Related
    ENSORLP00000030702.1, ENSORLT00000046759.2
    Conserved Domains (2) summary
    cl00011
    Location:4 → 118
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl27717
    Location:229 → 661
    Lipoxygenase
Nucleotide Protein
Heading Accession and Version

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