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LOC101155004 zinc finger CCCH domain-containing protein 6 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155004, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101155004
Gene description
zinc finger CCCH domain-containing protein 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 1 NC_019859.2 (4450926..4463663, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 1 NC_019859.1 (3627040..3675033, complement)

Chromosome 1 - NC_019859.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111947398 Neighboring gene nicotinate-nucleotide pyrophosphorylase [carboxylating] Neighboring gene uncharacterized LOC110016119 Neighboring gene integrin alpha-L-like Neighboring gene group XIIB secretory phospholipase A2-like protein Neighboring gene uncharacterized LOC101155251

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019859.2 Reference ASM223467v1 Primary Assembly

    Range
    4450926..4463663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020707670.2 → XP_020563329.1  zinc finger CCCH domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A3P9JF44
    Conserved Domains (1) summary
    COG5084
    Location:203 → 249
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_011483146.3 → XP_011481448.1  zinc finger CCCH domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A3P9JF44
    Conserved Domains (1) summary
    COG5084
    Location:203 → 249
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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