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TNNT1 troponin T1, slow skeletal type [ Ovis aries (sheep) ]

Gene ID: 101122212, updated on 8-Mar-2024

Summary

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Gene symbol
TNNT1
Gene description
troponin T1, slow skeletal type
See related
EnsemblRapid:ENSOARG00020005414
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See TNNT1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 14 NC_056067.1 (63054110..63065847)

Chromosome 14 - NC_056067.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 3 Neighboring gene troponin I3, cardiac type Neighboring gene protein phosphatase 1 regulatory subunit 12C Neighboring gene EPS8 signaling adaptor L1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056067.1 Chromosome 14 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Ovis aries Rambouillet Genome sequencing and assembly
  • BioProject: PRJNA414087
  • Analysis date: Thu Jan 09 10:41:41 2025

Bibliography

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Related articles in PubMed

  1. Three slow skeletal muscle troponin genes in small-tailed Han sheep (Ovis aries): molecular cloning, characterization and expression analysis. Sun Y, et al. Mol Biol Rep, 2016 Sep. PMID 27295221
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dna sequence and protein expression analysis of three troponin genes in domestic sheep.
    Title: Three slow skeletal muscle troponin genes in small-tailed Han sheep (Ovis aries): molecular cloning, characterization and expression analysis.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables troponin T binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomere organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in slow-twitch skeletal muscle fiber contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of troponin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
troponin T, slow skeletal muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056067.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    63054110..63065847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042232484.2 → XP_042088418.1  troponin T, slow skeletal muscle isoform X1

    UniProtKB/TrEMBL
    A0A1X9H6F1
    Conserved Domains (1) summary
    pfam00992
    Location:70 → 206
    Troponin

  2. XM_027978800.2 → XP_027834601.1  troponin T, slow skeletal muscle isoform X1

    UniProtKB/TrEMBL
    A0A1X9H6F1
    Related
    ENSOARP00020007156.2, ENSOART00020008666.2
    Conserved Domains (1) summary
    pfam00992
    Location:70 → 206
    Troponin

  3. XM_015100114.3 → XP_014955600.2  troponin T, slow skeletal muscle isoform X2

    UniProtKB/TrEMBL
    A0A836CW63
    Related
    ENSOARP00020007070.2, ENSOART00020008550.2
    Conserved Domains (1) summary
    pfam00992
    Location:59 → 195
    Troponin
Nucleotide Protein Strain
Heading Accession and Version

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