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LINC00609 long intergenic non-protein coding RNA 609 [ Homo sapiens (human) ]

Gene ID: 101101773, updated on 10-Oct-2023

Summary

Official Symbol
LINC00609provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 609provided by HGNC
Primary source
HGNC:HGNC:43960
See related
Ensembl:ENSG00000257585 AllianceGenome:HGNC:43960
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00609 in Genome Data Viewer
Location:
14q13.2-q13.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (36070427..36165288)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (30259211..30354073)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (36539633..36634494)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene EWS RNA binding protein 1 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5682 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:36416980-36418179 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:36445302-36445956 Neighboring gene uncharacterized LOC105370452 Neighboring gene interleukin enhancer binding factor 2 pseudogene 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:36630894-36632093 Neighboring gene papillary thyroid carcinoma susceptibility candidate 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:36653639-36654248 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:36654249-36654856 Neighboring gene RN7SK pseudogene 21 Neighboring gene uncharacterized LOC124903302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:36741667-36742166

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073454.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133304, AL162511
    Related
    ENST00000546508.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    36070427..36165288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    30259211..30354073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)