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CPSF4 cleavage and polyadenylation specific factor 4 [ Felis catus (domestic cat) ]

Gene ID: 101085423, updated on 8-Mar-2024

Summary

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Official Symbol
CPSF4
Official Full Name
cleavage and polyadenylation specific factor 4
Primary source
VGNC:VGNC:61142
See related
EnsemblRapid:ENSFCTG00005004526
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: E3
Exon count:
8
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) E3 NC_058383.1 (6614299..6627979)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) E3 NC_018738.3 (6674955..6688644)

Chromosome E3 - NC_058383.1Genomic Context describing neighboring genes Neighboring gene PDGFA associated protein 1 Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene ATP synthase membrane subunit f Neighboring gene uncharacterized LOC109495122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and comparative genomic analysis of 1227 Felis catus cDNA sequences enriched for developmental, clinical and nutritional phenotypes. Irizarry KJ, et al. BMC Genomics, 2012 Jan 18. PMID 22257742, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058383.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    6614299..6627979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045047729.1 → XP_044903664.1  cleavage and polyadenylation specificity factor subunit 4 isoform X2

    Conserved Domains (1) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_003998461.5 → XP_003998510.1  cleavage and polyadenylation specificity factor subunit 4 isoform X1

    See identical proteins and their annotated locations for XP_003998510.1

    UniProtKB/TrEMBL
    A0A337RX23
    Related
    ENSFCTP00005007981.1, ENSFCTT00005012327.1
    Conserved Domains (2) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    COG5222
    Location:198 → 258
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

  3. XM_045047730.1 → XP_044903665.1  cleavage and polyadenylation specificity factor subunit 4 isoform X5

    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  4. XM_003998462.6 → XP_003998511.1  cleavage and polyadenylation specificity factor subunit 4 isoform X3

    See identical proteins and their annotated locations for XP_003998511.1

    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  5. XM_045047731.1 → XP_044903666.1  cleavage and polyadenylation specificity factor subunit 4 isoform X6

    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  6. XM_006941949.5 → XP_006942011.1  cleavage and polyadenylation specificity factor subunit 4 isoform X4

    See identical proteins and their annotated locations for XP_006942011.1

    Related
    ENSFCTP00005007971.1, ENSFCTT00005012318.1
    Conserved Domains (2) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    COG5222
    Location:192 → 232
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Nucleotide Protein
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