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NCBP1 nuclear cap binding protein subunit 1 [ Felis catus (domestic cat) ]

Gene ID: 101082602, updated on 23-Jul-2018

Summary

Gene symbol
NCBP1
Gene description
nuclear cap binding protein subunit 1
See related
Ensembl:ENSFCAG00000001206
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs

Genomic context

See NCBP1 in Genome Data Viewer
Location:
chromosome: D4
Exon count:
23
Annotation release Status Assembly Chr Location
104 current Felis_catus_9.0 (GCF_000181335.3) D4 NC_018735.3 (62147125..62185475)
103 previous assembly Felis_catus_8.0 (GCF_000181335.2) D4 NC_018735.2 (60103813..60141899)

Chromosome D4 - NC_018735.3Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene forkhead box E1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Cap binding complex, organism-specific biosystem (from KEGG)
    Cap binding complex, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
  • Cap binding complex, conserved biosystem (from KEGG)
    Cap binding complex, conserved biosystemStructural complex; Genetic information processing; Spliceosome
  • RNA transport, organism-specific biosystem (from KEGG)
    RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • RNA transport, conserved biosystem (from KEGG)
    RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • Spliceosome, organism-specific biosystem (from KEGG)
    Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • Spliceosome, conserved biosystem (from KEGG)
    Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • mRNA surveillance pathway, organism-specific biosystem (from KEGG)
    mRNA surveillance pathway, organism-specific biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...
  • mRNA surveillance pathway, conserved biosystem (from KEGG)
    mRNA surveillance pathway, conserved biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...

General protein information

Preferred Names
LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Felis catus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Felis_catus_9.0 Primary Assembly

Genomic

  1. NC_018735.3 Reference Felis_catus_9.0 Primary Assembly

    Range
    62147125..62185475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003995654.4XP_003995703.2  LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1

    Related
    ENSFCAP00000001119.5, ENSFCAT00000001206.5
    Conserved Domains (3) summary
    smart00543
    Location:28240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485759
    MIF4G_like_2; MIF4G like
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