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COL5A1 collagen type V alpha 1 chain [ Felis catus (domestic cat) ]

Gene ID: 101082193, updated on 17-Aug-2024

Summary

Official Symbol
COL5A1
Official Full Name
collagen type V alpha 1 chain
Primary source
VGNC:VGNC:102915
See related
EnsemblRapid:ENSFCTG00005001027
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
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Genomic context

See COL5A1 in Genome Data Viewer
Location:
chromosome: D4
Exon count:
67
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D4 NC_058380.1 (93587273..93735906, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D4 NC_018735.3 (93182963..93332058, complement)

Chromosome D4 - NC_058380.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109494032 Neighboring gene olfactomedin 1 Neighboring gene uncharacterized LOC102901013 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058380.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    93587273..93735906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023242951.2XP_023098719.2  collagen alpha-1(V) chain isoform X2

    UniProtKB/TrEMBL
    A0A337SRD3
    Related
    ENSFCTP00005001582.1, ENSFCTT00005002689.1
    Conserved Domains (3) summary
    smart00038
    Location:16081837
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:43234
    TSPN; Thrombospondin N-terminal -like domains
    PRK08691
    Location:286399
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
  2. XM_023242950.2XP_023098718.2  collagen alpha-1(V) chain isoform X1

    UniProtKB/TrEMBL
    A0A337SFM5
    Related
    ENSFCTP00005001577.1, ENSFCTT00005002684.1
    Conserved Domains (3) summary
    smart00038
    Location:16081837
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:43234
    TSPN; Thrombospondin N-terminal -like domains
    PRK08691
    Location:286399
    PRK08691; DNA polymerase III subunits gamma and tau; Validated