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ACTR3-AS1 ACTR3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101060091, updated on 17-Jun-2024

Summary

Official Symbol
ACTR3-AS1provided by HGNC
Official Full Name
ACTR3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53965
See related
AllianceGenome:HGNC:53965
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.6), lymph node (RPKM 1.4) and 15 other tissues See more
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Genomic context

See ACTR3-AS1 in Genome Data Viewer
Location:
2q14.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113831183..113890992, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114255824..114315648, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114588760..114648569, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member F5 Neighboring gene microRNA 4782 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16427 Neighboring gene uncharacterized LOC105373570 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114575557-114576058 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114576059-114576558 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:114588353-114589552 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11887 Neighboring gene uncharacterized LOC124906071 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16431 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114647589-114648244 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16433 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11890 Neighboring gene actin related protein 3 Neighboring gene Sharpr-MPRA regulatory region 10480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16434 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11891 Neighboring gene long intergenic non-protein coding RNA 1191 Neighboring gene long intergenic non-protein coding RNA 2992 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110174.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104653, AC110769

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    113831183..113890992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    114255824..114315648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)