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SOX1 SRY-box transcription factor 1 [ Papio anubis (olive baboon) ]

Gene ID: 101019841, updated on 8-Mar-2024
Gene symbol
SOX1
Gene description
SRY-box transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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See SOX1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 15 NC_044990.1 (90036859..90040827)
103 previous assembly Panu_3.0 (GCF_000264685.3) 17 NC_018168.2 (89387333..89390862)

Chromosome 15 - NC_044990.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116270514 Neighboring gene small nucleolar RNA SNORD44 Neighboring gene uncharacterized LOC110741746 Neighboring gene uncharacterized LOC103879487

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcription factor SOX-1
Names
SRY-box 1

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044990.1 Reference Panubis1.0 Primary Assembly

    Range
    90036859..90040827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021929811.2 → XP_021785503.2  transcription factor SOX-1

    Conserved Domains (2) summary
    cd01388
    Location:51 → 122
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12336
    Location:121 → 248
    SOXp; SOX transcription factor
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials