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ITPR1-DT ITPR1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100996539, updated on 15-Dec-2021

Summary

Official Symbol
ITPR1-DTprovided by HGNC
Official Full Name
ITPR1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:44470
See related
Ensembl:ENSG00000231249
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ITPR1-AS1
Expression
Broad expression in thyroid (RPKM 1.5), prostate (RPKM 1.2) and 22 other tissues See more
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Genomic context

See ITPR1-DT in Genome Data Viewer
Location:
3p26.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (4490317..4493163, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (4532001..4534847, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene sulfatase modifying factor 1 Neighboring gene Sharpr-MPRA regulatory region 14120 Neighboring gene mitochondrial ribosomal protein S10 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 12228 Neighboring gene Sharpr-MPRA regulatory region 14798 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • ITPR1 antisense RNA 1 (head to head)

Clone Names

  • AC024168.2, DKFZp686D1113

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108075.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024168
    Related
    ENST00000412804.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    4490317..4493163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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