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L1CAM-AS1 L1CAM antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100996465, updated on 14-May-2022

Summary

Official Symbol
L1CAM-AS1provided by HGNC
Official Full Name
L1CAM antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55247
See related
Ensembl:ENSG00000273769 AllianceGenome:HGNC:55247
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LCAP; LCA10
Expression
Low expression observed in reference dataset See more
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Genomic context

See L1CAM-AS1 in Genome Data Viewer
Location:
Xq28
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (153880672..153888990)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (152154353..152162674)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (153146127..153154444)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 4 Neighboring gene CYCS pseudogene 45 Neighboring gene L1 cell adhesion molecule Neighboring gene arginine vasopressin receptor 2 Neighboring gene Rho GTPase activating protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • lung carcinoma-associated 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130768.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO681481, U52112
    Related
    ENST00000618311.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    153880672..153888990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    152154353..152162674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039768.2: Suppressed sequence

    Description
    NM_001039768.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein, and the CDS appears to be partial.