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FOXD3-AS1 FOXD3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100996301, updated on 27-Dec-2021

Summary

Official Symbol
FOXD3-AS1provided by HGNC
Official Full Name
FOXD3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40241
See related
Ensembl:ENSG00000230798
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAST; pasFOXD3
Expression
Biased expression in testis (RPKM 1.8), prostate (RPKM 0.5) and 11 other tissues See more
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Genomic context

See FOXD3-AS1 in Genome Data Viewer
Location:
1p31.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (63320884..63324441, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (63786555..63790112, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 466 Neighboring gene VISTA enhancer hs764 Neighboring gene ribosomal protein SA pseudogene 65 Neighboring gene microRNA 6068 Neighboring gene forkhead box D3 Neighboring gene DnaJ heat shock protein family (Hsp40) member C7 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • FOXD3 antisense RNA 1 (head to head)
  • FOXD3 antisense transcript 1'
  • FOXD3 promoter-associated antisense long non-coding RNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121634.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    KF925351, KF925352
    Related
    ENST00000418244.6
  2. NR_121635.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    KF925351
    Related
    ENST00000690549.1
  3. NR_121636.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    HY065209, KF925350
    Related
    ENST00000431294.6
  4. NR_121637.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    KF925349
    Related
    ENST00000427268.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    63320884..63324441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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