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LOC100995951 protein SSX3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100995951, updated on 8-Mar-2024

Summary

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Gene symbol
LOC100995951
Gene description
protein SSX3
See related
Ensembl:ENSPPAG00000043286
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
SSX3
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Genomic context

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See LOC100995951 in Genome Data Viewer
Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) X NC_073272.2 (49835236..49847459, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) X NC_073272.1 (49838609..49848895, complement)

Chromosome X - NC_073272.2Genomic Context describing neighboring genes Neighboring gene putative protein SSX6 Neighboring gene protein S100-A11-like Neighboring gene ornithine aminotransferase, mitochondrial-like Neighboring gene protein SSX4 Neighboring gene SSX family member 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SSX3
Names
SSX family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073272.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    49835236..49847459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034949753.3 → XP_034805644.1  protein SSX3

    UniProtKB/TrEMBL
    A0A2R9CR28
    Conserved Domains (2) summary
    smart00349
    Location:23 → 82
    KRAB; krueppel associated box
    pfam09514
    Location:163 → 187
    SSXRD; SSXRD motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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