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LTBR lymphotoxin beta receptor [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100982660, updated on 11-Mar-2024

Summary

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Gene symbol
LTBR
Gene description
lymphotoxin beta receptor
See related
Ensembl:ENSPPAG00000037185
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 10 NC_073259.2 (11944839..11952833)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 12 NC_073261.1 (11941870..11953500)

Chromosome 10 - NC_073259.2Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 1A Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene signal recognition particle 14 kDa protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic or lymphoid organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073259.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    11944839..11952833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003820319.4 → XP_003820367.1  tumor necrosis factor receptor superfamily member 3 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BG90, A0A2R9BNQ2
    Related
    ENSPPAP00000028273.1
    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 210
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_008973743.4 → XP_008971991.1  tumor necrosis factor receptor superfamily member 3 isoform X1

    UniProtKB/TrEMBL
    A0A2R9BNQ2
    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 210
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
Heading Accession and Version

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