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HOXC9 homeobox C9 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100976888, updated on 8-Mar-2024

Summary

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Gene symbol
HOXC9
Gene description
homeobox C9
See related
Ensembl:ENSPPAG00000035907
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 10 NC_073259.2 (40182580..40191726, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 12 NC_073261.1 (40179234..40184613, complement)

Chromosome 10 - NC_073259.2Genomic Context describing neighboring genes Neighboring gene homeobox C4 Neighboring gene homeobox C5 Neighboring gene microRNA mir-615 Neighboring gene homeobox C6 Neighboring gene uncharacterized LOC134728480 Neighboring gene homeobox C8 Neighboring gene uncharacterized LOC134728483 Neighboring gene uncharacterized LOC134728481 Neighboring gene microRNA mir-196 Neighboring gene homeobox C10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proximal/distal pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-C9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073259.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    40182580..40191726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003830991.5 → XP_003831039.1  homeobox protein Hox-C9

    See identical proteins and their annotated locations for XP_003831039.1

    UniProtKB/TrEMBL
    A0A2R9B7J5
    Related
    ENSPPAP00000025563.1
    Conserved Domains (2) summary
    smart00389
    Location:192 → 241
    HOX; Homeodomain
    pfam04617
    Location:1 → 179
    Hox9_act; Hox9 activation region
Nucleotide Protein
Heading Accession and Version

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