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SCN9A sodium voltage-gated channel alpha subunit 9 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100960927, updated on 17-Jan-2018

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
See related
Ensembl:ENSOGAG00000013021
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852485.1 (5190370..5356986, complement)

NW_003852485.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene sodium channel protein type 1 subunit alpha Neighboring gene microtubule-associated protein RP/EB family member 1 pseudogene Neighboring gene sodium voltage-gated channel alpha subunit 7

Genomic regions, transcripts, and products

Genomic Sequence:
NW_003852485 Unplaced Scaffold Reference OtoGar3

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
sodium channel, voltage-gated, type IX, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852485.1 Reference OtoGar3

    Range
    5190370..5356986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012808458.1XP_012663912.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12081465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9821186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:489607
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17811836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_003795149.2XP_003795197.1  sodium channel protein type 9 subunit alpha isoform X3

    Related
    ENSOGAP00000011668.2, ENSOGAT00000013028.2
    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11971454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9711175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:489607
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17701825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_012808459.1XP_012663913.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14491501
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12001457
    Ion_trans; Ion transport protein
    pfam06512
    Location:9741178
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:492610
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17731828
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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