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GATAD1 GATA zinc finger domain containing 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100950773, updated on 8-Mar-2024
Gene symbol
GATAD1
Gene description
GATA zinc finger domain containing 1
See related
Ensembl:ENSOGAG00000010833
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
all
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See GATAD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852400.1 (20099237..20109252)

NW_003852400.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and IBR domain containing 1 Neighboring gene ubiquitin-conjugating enzyme E2 E1 pseudogene Neighboring gene U6atac minor spliceosomal RNA Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene RNA binding motif protein 48

Genomic Sequence:
NW_003852400 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
GATA zinc finger domain-containing protein 1

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852400.1 Reference OtoGar3

    Range
    20099237..20109252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003782662.3 → XP_003782710.1  GATA zinc finger domain-containing protein 1

    UniProtKB/TrEMBL
    H0X3J1
    Related
    ENSOGAP00000009696.2, ENSOGAT00000010835.2
    Conserved Domains (1) summary
    cl00158
    Location:9 → 33
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
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