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OTX1 orthodenticle homeobox 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100925398, updated on 15-May-2025
Gene symbol
OTX1
Gene description
orthodenticle homeobox 1
See related
Ensembl:ENSSHAG00000011389
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
all
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Try the new Transcripts and proteins table
See OTX1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (106717176..106724951)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816741.1 (844484..848561, complement)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111718658 Neighboring gene EH domain binding protein 1 Neighboring gene uncharacterized LOC116421379 Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene uncharacterized LOC116421380

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
homeobox protein OTX1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    106717176..106724951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003758239.2 → XP_003758287.1  homeobox protein OTX1

    UniProtKB/TrEMBL
    G3WD18
    Related
    ENSSHAP00000013323.1, ENSSHAT00000013432.2
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 95
    Homeobox; Homeobox domain
    pfam03529
    Location:202 → 281
    TF_Otx; Otx1 transcription factor
Nucleotide Protein
Heading Accession and Version

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