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ATOH1 atonal bHLH transcription factor 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100921190, updated on 8-Mar-2024

Summary

Gene symbol
ATOH1
Gene description
atonal bHLH transcription factor 1
See related
Ensembl:ENSSHAG00000009094
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
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Genomic context

See ATOH1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 6 NC_045431.1 (138582132..138583226)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 6 Unlocalized Scaffold NW_003846756.1 (502087..503181, complement)

Chromosome 6 - NC_045431.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit RPB4 pseudogene Neighboring gene glutamate ionotropic receptor delta type subunit 2 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 pseudogene Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Neighboring gene hematopoietic prostaglandin D synthase

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045431.1 Reference mSarHar1.11 Primary Assembly

    Range
    138582132..138583226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003772871.1XP_003772919.1  protein atonal homolog 1

    UniProtKB/TrEMBL
    G3W530
    Related
    ENSSHAP00000010535.1, ENSSHAT00000010628.2
    Conserved Domains (1) summary
    cd00083
    Location:169227
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...