U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chpf2 chondroitin polymerizing factor 2 [ Mus musculus (house mouse) ]

Gene ID: 100910, updated on 8-Dec-2022

Summary

Official Symbol
Chpf2provided by MGI
Official Full Name
chondroitin polymerizing factor 2provided by MGI
Primary source
MGI:MGI:1917522
See related
Ensembl:ENSMUSG00000038181 AllianceGenome:MGI:1917522
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm42230; mir-671; mKIAA1402; 2010209O12Rik
Summary
Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Orthologous to human CHPF2 (chondroitin polymerizing factor 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in genital fat pad adult (RPKM 27.5), ovary adult (RPKM 21.2) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Chpf2 in Genome Data Viewer
Location:
5; 5 A3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (24788950..24799396)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (24586744..24594398)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 Neighboring gene microRNA 671 Neighboring gene glycerol-3-phosphate dehydrogenase 1-like pseudogene Neighboring gene negative regulator of ubiquitin-like proteins 1 Neighboring gene WD repeat domain 86

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

General protein information

Preferred Names
chondroitin sulfate glucuronyltransferase
NP_598674.2
XP_036020598.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133913.2NP_598674.2  chondroitin sulfate glucuronyltransferase precursor

    See identical proteins and their annotated locations for NP_598674.2

    Status: VALIDATED

    Source sequence(s)
    AK122504, BC036970
    Consensus CDS
    CCDS51436.1
    UniProtKB/TrEMBL
    Q3UU43
    Related
    ENSMUSP00000112804.2, ENSMUST00000121863.5
    Conserved Domains (2) summary
    pfam05679
    Location:242755
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177269
    Galactosyl_T; Galactosyltransferase

RNA

  1. NR_155297.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116136, AK138814, BE854619

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    24788950..24799396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164705.1XP_036020598.1  chondroitin sulfate glucuronyltransferase isoform X1

    UniProtKB/TrEMBL
    Q3UU43
    Related
    ENSMUSP00000085633.5, ENSMUST00000088295.9
    Conserved Domains (2) summary
    pfam05679
    Location:242755
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177269
    Galactosyl_T; Galactosyltransferase