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Iqck IQ motif containing K [ Rattus norvegicus (Norway rat) ]

Gene ID: 100909537, updated on 21-Jul-2018

Summary

Symbol
Iqckprovided by RGD
Full Name
IQ motif containing Kprovided by RGD
Primary source
RGD:6502881
See related
Ensembl:ENSRNOG00000036758
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 107.1), Heart (RPKM 37.1) and 7 other tissues See more
Orthologs

Genomic context

See Iqck in Genome Data Viewer
Location:
1q35
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (188571930..188690184)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (195514680..195634082)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene centriolar coiled-coil protein 110 Neighboring gene VPS35 endosomal protein sorting factor like Neighboring gene lysine-rich nucleolar protein 1 Neighboring gene uncharacterized LOC102550985 Neighboring gene G protein-coupled receptor, class C, group 5, member B Neighboring gene G protein-coupled receptor 139

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
IQ domain-containing protein K; IQ motif containing K
Names
IQ domain-containing protein K-like

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    188571930..188690184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017590206.1XP_017445695.1  IQ domain-containing protein K isoform X1

  2. XM_006230149.3XP_006230211.1  IQ domain-containing protein K isoform X2

    See identical proteins and their annotated locations for XP_006230211.1

    UniProtKB/TrEMBL
    D3ZTH1
    Related
    ENSRNOP00000051971.4, ENSRNOT00000055096.4
    Conserved Domains (1) summary
    pfam00612
    Location:218235
    IQ; IQ calmodulin-binding motif
  3. XM_006230150.2XP_006230212.1  IQ domain-containing protein K isoform X3

    See identical proteins and their annotated locations for XP_006230212.1

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    170963563..171080873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017590959.1XP_017446448.1  IQ domain-containing protein K isoform X1

  2. XM_006223468.3XP_006223530.1  IQ domain-containing protein K isoform X2

    See identical proteins and their annotated locations for XP_006223530.1

    UniProtKB/TrEMBL
    D3ZTH1
    Conserved Domains (1) summary
    pfam00612
    Location:218235
    IQ; IQ calmodulin-binding motif
  3. XM_006223469.3XP_006223531.1  IQ domain-containing protein K isoform X3

    See identical proteins and their annotated locations for XP_006223531.1

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