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Clec19a C-type lectin domain containing 19A [ Rattus norvegicus (Norway rat) ]

Gene ID: 100909498, updated on 8-Mar-2024

Summary

Official Symbol
Clec19aprovided by RGD
Official Full Name
C-type lectin domain containing 19Aprovided by RGD
Primary source
RGD:6503302
See related
AllianceGenome:RGD:6503302
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CLEC19A (C-type lectin domain containing 19A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
1q35
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (182102014..182112170, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (172667793..172677953, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (188006054..188014520, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549940 Neighboring gene uncharacterized LOC120099915 Neighboring gene uncharacterized LOC134485170 Neighboring gene synaptotagmin 17 Neighboring gene uncharacterized LOC134485171

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General protein information

Preferred Names
LOW QUALITY PROTEIN: C-type lectin domain family 19 member A
Names
C-type lectin domain family 19 member A
C-type lectin domain family 19, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    182102014..182112170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097903.1XP_038953831.1  LOW QUALITY PROTEIN: C-type lectin domain family 19 member A

    Conserved Domains (1) summary
    cl02432
    Location:49194
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain