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IFNG-AS1 IFNG antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100885789, updated on 8-Mar-2024

Summary

Official Symbol
IFNG-AS1provided by HGNC
Official Full Name
IFNG antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43910
See related
AllianceGenome:HGNC:43910
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NEST; Tmevpg1; GS1-410F4.2
Expression
Biased expression in lymph node (RPKM 3.8), appendix (RPKM 1.7) and 7 other tissues See more
Orthologs
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Genomic context

See IFNG-AS1 in Genome Data Viewer
Location:
12q15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67989447..68026337)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67968959..68005854)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (68383225..68415107)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2421 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:68160813-68161536 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:68166311-68166833 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:68221514-68222713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68233883-68234382 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:68270550-68271050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:68271051-68271551 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68293706-68294442 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68294443-68295177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68313920-68314420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68314421-68314921 Neighboring gene long intergenic non-protein coding RNA 1479 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:68374855-68376054 Neighboring gene ribosomal protein L39 pseudogene 28 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6631 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 Neighboring gene 39S ribosomal protein L21, mitochondrial-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • IFNG antisense RNA 1 (non-protein coding)
  • LincR-Ifng-3'AS
  • Theiler's murine encephalomyelitis virus persistence candidate gene 1
  • nettoie Salmonella pas Theiler's

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104124.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294
  2. NR_104125.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294
  3. NR_186227.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294
  4. NR_186228.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294
  5. NR_186229.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294
  6. NR_186230.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294
  7. NR_186231.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005294

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    67989447..68026337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    67968959..68005854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)