Format

Send to:

Choose Destination

NALCN-AS1 NALCN antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100885778, updated on 12-Oct-2019

Summary

Official Symbol
NALCN-AS1provided by HGNC
Official Full Name
NALCN antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:42743
See related
Ensembl:ENSG00000233009
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 3.9), thyroid (RPKM 0.6) and 8 other tissues See more

Genomic context

See NALCN-AS1 in Genome Data Viewer
Location:
13q32.3
Exon count:
8
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (100708325..101059286)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (101360579..101711638)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein S26 pseudogene 47 Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene cytochrome c oxidase subunit 5B pseudogene 6 Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 4 Neighboring gene Sharpr-MPRA regulatory region 9290 Neighboring gene ADP ribosylation factor 4 pseudogene 3 Neighboring gene long intergenic non-protein coding RNA 411 Neighboring gene sodium leak channel, non-selective Neighboring gene integrin subunit beta like 1 Neighboring gene uncharacterized LOC107984616 Neighboring gene RNA, U1 small nuclear 24, pseudogene Neighboring gene fibroblast growth factor 14

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047687.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK025806, AL138707
    Related
    ENST00000457843.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    100708325..101059286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_011332700.1 Reference GRCh38.p13 PATCHES

    Range
    112365..148515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center