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LOC100883541 LIM/homeobox protein Lhx9-like [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 100883541, updated on 19-Apr-2026
Gene symbol
LOC100883541
Gene description
LIM/homeobox protein Lhx9-like
See related
EnsemblRapid:LOC100883541
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Altocrustacea; Allotriocarida; Hexapoda; Insecta; Pterygota; Neoptera; Eumetabola; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
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See LOC100883541 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2025_08 current iyMegRotu1 (GCF_050947335.1) 11 NC_134993.1 (10993162..11084891, complement)
101 previous assembly MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797103.1 (316708..408142)

Chromosome 11 - NC_134993.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC143265336 Neighboring gene OXA1L mitochondrial inner membrane protein Neighboring gene LIM/homeobox protein Lhx9 Neighboring gene uncharacterized LOC143265436 Neighboring gene pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 Neighboring gene uncharacterized LOC143265435 Neighboring gene A-kinase anchor protein spoonbill

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
LIM/homeobox protein Lhx9-like; protein apterous-like

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RefSeqs of Annotated Genomes: GCF_050947335.1-RS_2025_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyMegRotu1

Genomic

  1. NC_134993.1 Reference iyMegRotu1

    Range
    10993162..11084891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012279871.2 → XP_012135261.1  protein apterous-like isoform X2

    Related
    XP_012135261.1
    Conserved Domains (3) summary
    cd09369
    Location:193 → 246
    LIM1_Lhx2_Lhx9; The first LIM domain of Lhx2 and Lhx9 family
    cd09377
    Location:252 → 310
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    pfam00046
    Location:456 → 508
    Homeobox; Homeobox domain

  2. XM_012279870.2 → XP_012135260.1  protein apterous-like isoform X1

    Related
    XP_012135260.1
    Conserved Domains (3) summary
    cd09369
    Location:194 → 247
    LIM1_Lhx2_Lhx9; The first LIM domain of Lhx2 and Lhx9 family
    cd09377
    Location:253 → 311
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    pfam00046
    Location:457 → 509
    Homeobox; Homeobox domain

  3. XM_076537633.1 → XP_076393748.1  LIM/homeobox protein Lhx9-like isoform X3

Nucleotide Protein
Heading Accession and Version

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