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LOC100876186 achaete-scute complex protein T5-like [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 100876186, updated on 1-Oct-2024

Summary

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Gene symbol
LOC100876186
Gene description
achaete-scute complex protein T5-like
See related
EnsemblRapid:LOC100876186
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
Orthologs
honey bee all
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Genomic context

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See LOC100876186 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797099.1 (3467327..3470916, complement)

NW_003797099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100876071 Neighboring gene uncharacterized LOC100877353 Neighboring gene uncharacterized LOC105661794 Neighboring gene yellow-y

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003797099.1 Unplaced Scaffold Reference MROT_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
achaete-scute complex protein T5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MROT_1.0

Genomic

  1. NW_003797099.1 Reference MROT_1.0

    Range
    3467327..3470916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003700709.2 → XP_003700757.1  achaete-scute complex protein T5-like

    Related
    XP_003700757.1, XM_003700709.2
    Conserved Domains (1) summary
    smart00353
    Location:94 → 156
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases