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APOBEC3B-AS1 APOBEC3B antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874530, updated on 13-May-2022

Summary

Official Symbol
APOBEC3B-AS1provided by HGNC
Official Full Name
APOBEC3B antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43836
See related
Ensembl:ENSG00000249310 AllianceGenome:HGNC:43836
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 17.0), appendix (RPKM 7.1) and 11 other tissues See more
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Genomic context

See APOBEC3B-AS1 in Genome Data Viewer
Location:
22q13.1
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (38991559..38998220, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (39461980..39468640, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (39387564..39394225, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373033 Neighboring gene uncharacterized LOC124905118 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3B Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr22:39409474-39410092 and GRCh37_chr22:39410093-39410710 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3C Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3D

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • APOBEC3B antisense RNA 1 (non-protein coding)
  • CTA-150C2.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104187.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022318
    Related
    ENST00000513758.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    38991559..38998220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    39461980..39468640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)