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HOXC13-AS HOXC13 antisense RNA [ Homo sapiens (human) ]

Gene ID: 100874366, updated on 17-Sep-2024

Summary

Official Symbol
HOXC13-ASprovided by HGNC
Official Full Name
HOXC13 antisense RNAprovided by HGNC
Primary source
HGNC:HGNC:43753
See related
Ensembl:ENSG00000249641 AllianceGenome:HGNC:43753
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HOXC-AS5
Expression
Biased expression in skin (RPKM 2.1), placenta (RPKM 0.1) and 1 other tissue See more
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Genomic context

See HOXC13-AS in Genome Data Viewer
Location:
12q13.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (53935328..53939643, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (53900850..53905165, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (54329112..54333427, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54141521-54142049 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54142050-54142577 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54144138-54144726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4517 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4518 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6429 Neighboring gene chondrogenesis-associated transcript Neighboring gene RN7SK pseudogene 289 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:54242057-54243256 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_29403 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:54261991-54263190 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_29464 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_29460 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:54321787-54322624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54345326-54345913 Neighboring gene uncharacterized LOC105369775 Neighboring gene homeobox C13 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:54355207-54355431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54360165-54361069 Neighboring gene NUP98-HOXC11 recombination region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:54368136-54368730 Neighboring gene homeobox C12 Neighboring gene HOX transcript antisense RNA Neighboring gene homeobox C11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • HOXC cluster antisense RNA 5 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047507.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BE905258, BX097788, BX363129, CN364530
    Related
    ENST00000512916.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    53935328..53939643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    53900850..53905165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)