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CCDC200 coiled-coil domain containing 200 [ Homo sapiens (human) ]

Gene ID: 100874261, updated on 14-Dec-2021

Summary

Official Symbol
CCDC200provided by HGNC
Official Full Name
coiled-coil domain containing 200provided by HGNC
Primary source
HGNC:HGNC:43658
See related
Ensembl:ENSG00000236383
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00854; TMEM106A-AS1
Expression
Biased expression in testis (RPKM 18.6), kidney (RPKM 1.8) and 2 other tissues See more
Orthologs
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Genomic context

See CCDC200 in Genome Data Viewer
Location:
17q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (43221417..43231269, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (41373437..41383336, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929767 Neighboring gene NBR1 autophagy cargo receptor Neighboring gene Sharpr-MPRA regulatory region 10579 Neighboring gene transmembrane protein 106A Neighboring gene RNA, U2 small nuclear 1 Neighboring gene Sharpr-MPRA regulatory region 4809

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
coiled-coil domain-containing protein 200
Names
TMEM106A antisense RNA 1 (non-protein coding)
TMEM106A antisense RNA 1 (tail to tail)
long intergenic non-protein coding RNA 854

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363254.2NP_001350183.1  coiled-coil domain-containing protein 200

    Status: VALIDATED

    Source sequence(s)
    AC024051
    Related
    ENSP00000490609.1, ENST00000636331.2

RNA

  1. NR_047479.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024051
    Related
    ENST00000433702.7

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    43221417..43231269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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