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LINC00853 long intergenic non-protein coding RNA 853 [ Homo sapiens (human) ]

Gene ID: 100874253, updated on 25-Jan-2022

Summary

Official Symbol
LINC00853provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 853provided by HGNC
Primary source
HGNC:HGNC:43716
See related
Ensembl:ENSG00000224805 AllianceGenome:HGNC:43716
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ncRNA-a4; PDZK1IP1-AS1
Expression
Broad expression in kidney (RPKM 1.7), thyroid (RPKM 0.4) and 16 other tissues See more
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Genomic context

See LINC00853 in Genome Data Viewer
Location:
1p33
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (47179250..47180339)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (47644922..47646011)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MT-ND1 pseudogene 34 Neighboring gene uncharacterized LOC105378701 Neighboring gene Sharpr-MPRA regulatory region 13342 Neighboring gene GATA motif-containing MPRA enhancer 229 Neighboring gene PDZK1 interacting protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.
EBI GWAS Catalog

General gene information

Other Names

  • PDZK1IP1 antisense RNA 1 (non-protein coding)
  • PDZK1IP1 antisense RNA 1 (tail to tail)
  • noncoding RNA-activating 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047498.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI651041, AI792909, AL135960
    Related
    ENST00000429328.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    47179250..47180339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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