Format

Send to:

Choose Destination

OBI1-AS1 OBI1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874222, updated on 25-Jan-2022

Summary

Official Symbol
OBI1-AS1provided by HGNC
Official Full Name
OBI1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:42700
See related
Ensembl:ENSG00000234377 AllianceGenome:HGNC:42700
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
POU4F1-AS1; RNF219-AS1
Expression
Ubiquitous expression in testis (RPKM 9.5), brain (RPKM 7.1) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See OBI1-AS1 in Genome Data Viewer
Location:
13q22.3-q31.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (78054855..78617325)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (78628990..79191460)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1069 Neighboring gene long intergenic non-protein coding RNA 446 Neighboring gene serglycin pseudogene 1 Neighboring gene VISTA enhancer hs915 Neighboring gene RNY3 pseudogene 3 Neighboring gene ribosomal protein L31 pseudogene 54 Neighboring gene elongin C pseudogene 23 Neighboring gene uncharacterized LOC780529 Neighboring gene POU class 4 homeobox 1 Neighboring gene ORC ubiquitin ligase 1 Neighboring gene uncharacterized LOC105370272 Neighboring gene ribosomal protein L21 pseudogene 111 Neighboring gene long intergenic non-protein coding RNA 331

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.
EBI GWAS Catalog
Genetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network.
EBI GWAS Catalog
Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • POU4F1 antisense RNA 1 (non-protein coding)
  • RNF219 antisense RNA 1

Clone Names

  • FLJ38460, DKFZp686O0249

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047001.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138957, AL162852, AL445209
    Related
    ENST00000606429.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    78054855..78617325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center