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ATP11A-AS1 ATP11A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874205, updated on 10-Oct-2023

Summary

Official Symbol
ATP11A-AS1provided by HGNC
Official Full Name
ATP11A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40645
See related
Ensembl:ENSG00000232684 AllianceGenome:HGNC:40645
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

See ATP11A-AS1 in Genome Data Viewer
Location:
13q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (112745449..112754731, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (111994517..112003894, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (113399763..113409045, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113302064-113302958 Neighboring gene ATP11A upstream neighbor lncRNA Neighboring gene Sharpr-MPRA regulatory region 9322 Neighboring gene uncharacterized LOC102725228 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113343189-113343706 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5535 Neighboring gene NANOG hESC enhancer GRCh37_chr13:113346005-113346506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113356801-113357507 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113358129-113358672 Neighboring gene ATPase phospholipid transporting 11A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113368127-113368956 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:113373763-113374962 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:113377535-113378036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113378763-113379342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113379343-113379922 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113383173-113383972 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113385574-113386373 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113387175-113387973 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113388178-113388911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113388912-113389644 Neighboring gene Sharpr-MPRA regulatory region 8271 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:113391853-113392353 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:113391352-113391852 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113400527-113401048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113401693-113402192 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:113409322-113410521 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113410501-113411060 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113411061-113411619 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113416805-113417352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113417353-113417898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113418783-113419766 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113419767-113420748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8033 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113424987-113425542 Neighboring gene uncharacterized LOC124903253 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113430716-113431329 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:113432945-113433094 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113434144-113435009 Neighboring gene uncharacterized LOC124903252 Neighboring gene NANOG hESC enhancer GRCh37_chr13:113444396-113445115

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046661.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL356752
    Related
    ENST00000446442.1
  2. NR_109811.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate segment, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL356752

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    112745449..112754731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    111994517..112003894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)