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ATP11A-AS1 ATP11A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874205, updated on 23-Nov-2021

Summary

Official Symbol
ATP11A-AS1provided by HGNC
Official Full Name
ATP11A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40645
See related
Ensembl:ENSG00000232684
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

See ATP11A-AS1 in Genome Data Viewer
Location:
13q34
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (112745449..112754731, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (113399763..113409045, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102725228 Neighboring gene ATPase phospholipid transporting 11A Neighboring gene Sharpr-MPRA regulatory region 8271 Neighboring gene MCF.2 cell line derived transforming sequence like Neighboring gene MCF2L antisense RNA 1 Neighboring gene uncharacterized LOC107984591

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046661.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL356752
    Related
    ENST00000446442.1
  2. NR_109811.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate segment, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL356752

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    112745449..112754731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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