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LINC00400 long intergenic non-protein coding RNA 400 [ Homo sapiens (human) ]

Gene ID: 100874159, updated on 23-Nov-2021

Summary

Official Symbol
LINC00400provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 400provided by HGNC
Primary source
HGNC:HGNC:42729
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in adrenal (RPKM 1.7), brain (RPKM 0.9) and 17 other tissues See more
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Genomic context

See LINC00400 in Genome Data Viewer
Location:
13q14.11
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (43113165..43159466)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (43687301..43733602)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370178 Neighboring gene epithelial stromal interaction 1 Neighboring gene zinc finger DHHC-type containing 4 pseudogene 1 Neighboring gene uncharacterized LOC105370179 Neighboring gene DnaJ heat shock protein family (Hsp40) member C15 Neighboring gene LINC00400 intron CAGE-defined mid-level expression enhancer Neighboring gene molybdenum cofactor synthesis 3 pseudogene 2 Neighboring gene ecto-NOX disulfide-thiol exchanger 1 Neighboring gene ribosomal protein L36 pseudogene 19

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047013.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138709, AL445217, AV711458

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    43113165..43159466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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