U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00393 long intergenic non-protein coding RNA 393 [ Homo sapiens (human) ]

Gene ID: 100874156, updated on 9-Feb-2023

Summary

Official Symbol
LINC00393provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 393provided by HGNC
Primary source
HGNC:HGNC:42721
See related
AllianceGenome:HGNC:42721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00393 in Genome Data Viewer
Location:
13q22.1
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (73456895..73661903, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (72678880..72883621, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene RNY1 pseudogene 8 Neighboring gene MARK2 pseudogene 12 Neighboring gene uncharacterized LOC105377816 Neighboring gene uncharacterized LOC105370256 Neighboring gene long intergenic non-protein coding RNA 392 Neighboring gene KLF transcription factor 12 Neighboring gene uncharacterized LOC124903182 Neighboring gene Sharpr-MPRA regulatory region 11269

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184171.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL160032

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    73456895..73661903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749747.2 RNA Sequence

  2. XR_007063821.1 RNA Sequence

  3. XR_007063822.1 RNA Sequence

  4. XR_001749905.2 RNA Sequence

  5. XR_007063823.1 RNA Sequence

  6. XR_007063824.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    72678880..72883621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083935.1 RNA Sequence

  2. XR_007083938.1 RNA Sequence

  3. XR_007083936.1 RNA Sequence

  4. XR_007083940.1 RNA Sequence

  5. XR_007083937.1 RNA Sequence

  6. XR_007083939.1 RNA Sequence