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PCDH9-AS2 PCDH9 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100874064, updated on 17-Jun-2024

Summary

Official Symbol
PCDH9-AS2provided by HGNC
Official Full Name
PCDH9 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:39896
See related
Ensembl:ENSG00000228842 AllianceGenome:HGNC:39896
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See PCDH9-AS2 in Genome Data Viewer
Location:
13q21.32
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (66825169..66915031)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (66045139..66135043)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (67399301..67489163)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene PCDH9 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr13:66918798-66919386 Neighboring gene protocadherin 9 Neighboring gene NANOG hESC enhancer GRCh37_chr13:67104803-67105304 Neighboring gene uncharacterized LOC105370247 Neighboring gene Sharpr-MPRA regulatory region 12707 Neighboring gene RNA, U7 small nuclear 87 pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:67311857-67312463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:67422445-67422946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:67422947-67423446 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:67507550-67508749 Neighboring gene PCDH9 antisense RNA 3 Neighboring gene PCDH9 antisense RNA 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046527.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX117607
    Related
    ENST00000419371.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    66825169..66915031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    66045139..66135043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)