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COX10-DT COX10 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100874058, updated on 10-Oct-2023

Summary

Official Symbol
COX10-DTprovided by HGNC
Official Full Name
COX10 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:38873
See related
Ensembl:ENSG00000236088 AllianceGenome:HGNC:38873
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
COX10AS; COX10-AS; COX10-AS1
Expression
Ubiquitous expression in lymph node (RPKM 3.7), skin (RPKM 3.5) and 25 other tissues See more
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Genomic context

See COX10-DT in Genome Data Viewer
Location:
17p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (14029292..14069458, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (13937098..13977268, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (13932609..13972775, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100506974 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13778177-13778694 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:13825822-13826354 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:13826355-13826887 Neighboring gene CDRT15 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11742 Neighboring gene cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 Neighboring gene distal CMT1A-REP Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47071 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:14109359-14109859 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:14139403-14139910 Neighboring gene CMT1A duplicated region transcript 15

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • COX10 antisense RNA (non-protein coding)
  • COX10 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ41105

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_049718.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK123100
    Related
    ENST00000449363.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    14029292..14069458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    13937098..13977268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)