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FALEC focally amplified long non-coding RNA in epithelial cancer [ Homo sapiens (human) ]

Gene ID: 100874054, updated on 23-Nov-2021

Summary

Official Symbol
FALECprovided by HGNC
Official Full Name
focally amplified long non-coding RNA in epithelial cancerprovided by HGNC
Primary source
HGNC:HGNC:43713
See related
Ensembl:ENSG00000228126 MIM:616092
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAL1; ncRNA-a1; LINC00568
Expression
Low expression observed in reference dataset See more
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Genomic context

See FALEC in Genome Data Viewer
Location:
1q21.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (150515757..150518032)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (150488233..150490508)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene microRNA 6878 Neighboring gene extracellular matrix protein 1 Neighboring gene CRISPRi-validated cis-regulatory element chr1.8461 Neighboring gene ADAMTSL4 antisense RNA 2 Neighboring gene Sharpr-MPRA regulatory region 6123

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • focally amplified lncRNA on chromosome 1
  • long intergenic non-protein coding RNA 568
  • noncoding RNA-activating 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_051960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356356, AL713297
    Related
    ENST00000416894.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    150515757..150518032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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