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CADM2-AS2 CADM2 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100874037, updated on 10-Oct-2023

Summary

Official Symbol
CADM2-AS2provided by HGNC
Official Full Name
CADM2 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:41247
See related
Ensembl:ENSG00000241648 AllianceGenome:HGNC:41247
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See CADM2-AS2 in Genome Data Viewer
Location:
3p12.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (85799987..85828050, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (85871825..85899857, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (85849137..85877200, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:85169693-85170523 Neighboring gene small nucleolar RNA, H/ACA box 95 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:85443162-85443393 Neighboring gene microRNA 5688 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:85625238-85625814 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:85794578-85794816 Neighboring gene THAP domain containing 12 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:86132353-86132853 Neighboring gene small nucleolar RNA Z40

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046752.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC117452
    Related
    ENST00000467225.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    85799987..85828050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    85871825..85899857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)