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HCFC1-AS1 HCFC1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100873990, updated on 13-May-2022

Summary

Official Symbol
HCFC1-AS1provided by HGNC
Official Full Name
HCFC1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40273
See related
AllianceGenome:HGNC:40273
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See HCFC1-AS1 in Genome Data Viewer
Location:
Xq28
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (153968765..153970091)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (152242485..152243811)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (153234216..153235542)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene host cell factor C1 Neighboring gene transmembrane protein 187 Neighboring gene microRNA 3202-1 Neighboring gene microRNA 3202-2 Neighboring gene CRISPRi-validated cis-regulatory element chrX.2695

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046608.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    U52112

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    153968765..153970091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    152242485..152243811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)