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GPC6-AS1 GPC6 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100873972, updated on 17-Jun-2024

Summary

Official Symbol
GPC6-AS1provided by HGNC
Official Full Name
GPC6 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:39909
See related
Ensembl:ENSG00000236520 AllianceGenome:HGNC:39909
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See GPC6-AS1 in Genome Data Viewer
Location:
13q31.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (94154193..94187991, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (93357916..93391730, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (94806447..94840245, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene glypican 6 Neighboring gene NANOG hESC enhancer GRCh37_chr13:94470501-94471002 Neighboring gene Sharpr-MPRA regulatory region 9781 Neighboring gene GPC6 antisense RNA 2 Neighboring gene RNA, 5S ribosomal pseudogene 35 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:94795799-94796732 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:94840401-94841316 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:94901699-94902296 Neighboring gene NANOG hESC enhancer GRCh37_chr13:94964513-94965082 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7864 Neighboring gene NANOG hESC enhancer GRCh37_chr13:94996270-94996868 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:95024062-95024724 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:95143673-95144872 Neighboring gene uncharacterized LOC124903191 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5434 Neighboring gene tRNA-Phe (anticodon GAA) 1-5 Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046535.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161426, AL354762
    Related
    ENST00000436329.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    94154193..94187991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    93357916..93391730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)