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PTCHD1-AS PTCHD1 antisense RNA (head to head) [ Homo sapiens (human) ]

Gene ID: 100873065, updated on 23-Nov-2021

Summary

Official Symbol
PTCHD1-ASprovided by HGNC
Official Full Name
PTCHD1 antisense RNA (head to head)provided by HGNC
Primary source
HGNC:HGNC:37703
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DDX53-AS1; PTCHD1AS1; PTCHD1AS2
Expression
Low expression observed in reference dataset See more
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Genomic context

See PTCHD1-AS in Genome Data Viewer
Location:
Xp22.11
Exon count:
12
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (22193005..23293146, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (22211122..23311263, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene spermine synthase Neighboring gene phosphate regulating endopeptidase homolog X-linked Neighboring gene PHEX antisense RNA 1 Neighboring gene Cbl proto-oncogene like 2 Neighboring gene methyltransferase like 15 pseudogene 3 Neighboring gene RNA, U6 small nuclear 266, pseudogene Neighboring gene DEAD-box helicase 53 Neighboring gene FAM3C pseudogene Neighboring gene PDCL2 pseudogene 1 Neighboring gene HIKESHI pseudogene 1 Neighboring gene patched domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 11823 Neighboring gene peroxiredoxin 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073010.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004673, DA355362, DA390816, Y10196

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    22193005..23293146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_046436.1: Suppressed sequence

    Description
    NR_046436.1: This RefSeq was permanently suppressed because the transcript aligns to the human genome with non-consensus splice sites which lack further support.
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