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LOC100862792 spatzle-like protein [ Bombyx mori (domestic silkworm) ]

Gene ID: 100862792, updated on 3-Apr-2024

Summary

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Gene symbol
LOC100862792
Gene description
spatzle-like protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
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Genomic context

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See LOC100862792 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 3 NC_085109.1 (14114758..14128722, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 3 NC_051360.1 (14064385..14078781, complement)

Chromosome 3 - NC_085109.1Genomic Context describing neighboring genes Neighboring gene nucleosomal histone kinase 1 Neighboring gene uncharacterized LOC134201833 Neighboring gene toll-like receptor 4 Neighboring gene SET domain-containing protein SmydA-8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Toll binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spatzle-like protein
Names
spatzle 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257018.1 → NP_001243947.1  spatzle-like protein

    See identical proteins and their annotated locations for NP_001243947.1

    Status: PROVISIONAL

    Source sequence(s)
    JN628282
    UniProtKB/TrEMBL
    A0A345VNQ3, G5DCB8
    Conserved Domains (1) summary
    pfam16077
    Location:289 → 377
    Spaetzle; Spaetzle

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085109.1 Reference ASM3026992v2 Primary Assembly

    Range
    14114758..14128722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012691449.4 → XP_012546903.1  spatzle-like protein isoform X1

    UniProtKB/TrEMBL
    A0A345VNQ3, A0A8R2G9Z1
    Conserved Domains (1) summary
    pfam16077
    Location:325 → 413
    Spaetzle; Spaetzle

  2. XM_012691450.4 → XP_012546904.1  spatzle-like protein isoform X2

    UniProtKB/TrEMBL
    A0A345VNQ3, A0A8R2GA61
    Conserved Domains (1) summary
    pfam16077
    Location:289 → 377
    Spaetzle; Spaetzle

  3. XM_062674029.1 → XP_062530013.1  spatzle-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8R2GA61
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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