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ALDH1L1-AS2 ALDH1L1 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100862662, updated on 14-Dec-2021

Summary

Official Symbol
ALDH1L1-AS2provided by HGNC
Official Full Name
ALDH1L1 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:42446
See related
Ensembl:ENSG00000246022
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 4.2), kidney (RPKM 2.9) and 9 other tissues See more
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Genomic context

See ALDH1L1-AS2 in Genome Data Viewer
Location:
3q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (126180065..126210169)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (125898908..125929012)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ALDH1L1 antisense RNA 1 Neighboring gene aldehyde dehydrogenase 1 family member L1 Neighboring gene uncharacterized LOC105374083 Neighboring gene RNA, U1 small nuclear 30, pseudogene Neighboring gene Sharpr-MPRA regulatory region 2719 Neighboring gene uncharacterized LOC107986124 Neighboring gene uncharacterized LOC105374088 Neighboring gene Kruppel like factor 15

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.
GeneReviews: Not available
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
GeneReviews: Not available
Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke.
GeneReviews: Not available

General gene information

Other Names

  • ALDH1L1 antisense RNA 2 (non-protein coding)

Clone Names

  • FLJ40189

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046383.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079848, BC039521, DA256650, DA566603
    Related
    ENST00000500232.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    126180065..126210169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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