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Gm21586 predicted gene, 21586 [ Mus musculus (house mouse) ]

Gene ID: 100862247, updated on 27-Nov-2024

Summary

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Official Symbol
Gm21586provided by MGI
Official Full Name
predicted gene, 21586provided by MGI
Primary source
MGI:MGI:5434941
See related
Ensembl:ENSMUSG00000095234 AllianceGenome:MGI:5434941
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 148.8), cortex adult (RPKM 27.1) and 6 other tissues See more
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Genomic context

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See Gm21586 in Genome Data Viewer
Location:
4 A5; 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42438686..42448653)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42438686..42448653)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 31 subfamily F member 1C Neighboring gene predicted gene, 21953 Neighboring gene predicted gene, 46892 Neighboring gene protein FAM205A-like Neighboring gene predicted gene 3883 Neighboring gene predicted gene, 53189 Neighboring gene predicted gene, 52694

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Gene duplications at the chemokine locus on mouse chromosome 4: multiple strain-specific haplotypes and the deletion of secondary lymphoid-organ chemokine and EBI-1 ligand chemokine genes in the plt mutation. Nakano H, et al. J Immunol, 2001 Jan 1. PMID 11123313
  2. Chemokine/chemokine receptor nomenclature. IUIS/WHO Subcommittee on Chemokine Nomenclature. J Immunol Methods, 2002 Apr 1. PMID 12080938

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
C-C motif chemokine 27-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270432.2 → NP_001257361.1  C-C motif chemokine 27-like

    See identical proteins and their annotated locations for NP_001257361.1

    Status: VALIDATED

    Source sequence(s)
    BX666061
    Consensus CDS
    CCDS57273.1
    UniProtKB/TrEMBL
    A2APU9, F6T205
    Related
    ENSMUSP00000158759.2, ENSMUST00000238328.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    42438686..42448653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253069.1 → XP_030108929.1  C-C motif chemokine 27-like isoform X2

  2. XM_006537540.5 → XP_006537603.3  C-C motif chemokine 27-like isoform X1

    UniProtKB/TrEMBL
    L7N244

  3. XM_006537539.5 → XP_006537602.3  C-C motif chemokine 27-like isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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