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LINC00554 long intergenic non-protein coding RNA 554 [ Homo sapiens (human) ]

Gene ID: 100861542, updated on 10-Dec-2019

Summary

Official Symbol
LINC00554provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 554provided by HGNC
Primary source
HGNC:HGNC:43697
See related
Ensembl:ENSG00000260738
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncZic2

Genomic context

See LINC00554 in Genome Data Viewer
Location:
13q32.3
Exon count:
1
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (99994899..99997909, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene Zic family member 5 Neighboring gene Zic family member 2 polyalanine repeat instability region Neighboring gene Zic family member 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit A12 pseudogene 1 Neighboring gene asparagine synthetase pseudogene 3

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000013.11 Chromosome 13 Reference GRCh38.p13 Primary Assembly

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 Loci.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047483.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355338
    Related
    ENST00000564841.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    99994899..99997909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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