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CHI3L1 chitinase 3 like 1 [ Capra hircus (goat) ]

Gene ID: 100860825, updated on 1-May-2025
Gene symbol
CHI3L1
Gene description
chitinase 3 like 1
See related
Ensembl:ENSCHIG00000003384
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Also known as
BP40; MGP-40
Orthologs
all
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See CHI3L1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 16 NC_030823.1 (343308..355619, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 16 NC_022308.1 (372009..384555, complement)

Chromosome 16 - NC_030823.1Genomic Context describing neighboring genes Neighboring gene adenosine A1 receptor Neighboring gene myosin binding protein H Neighboring gene chitotriosidase-1-like Neighboring gene uncharacterized LOC106502936

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Carbohydrate-binding properties of goat secretory glycoprotein (SPG-40) and its functional implications: structures of the native glycoprotein and its four complexes with chitin-like oligosaccharides. Kumar J, et al. Acta Crystallogr D Biol Crystallogr, 2007 Apr. PMID 17372347
  2. Crystal structure of a novel regulatory 40-kDa mammary gland protein (MGP-40) secreted during involution. Mohanty AK, et al. J Biol Chem, 2003 Apr 18. PMID 12529329
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
chitinase-3-like protein 1
Names
mammary gland protein 40

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001285689.1 → NP_001272618.1  chitinase-3-like protein 1 precursor

    See identical proteins and their annotated locations for NP_001272618.1

    Status: PROVISIONAL

    Source sequence(s)
    AY081150
    UniProtKB/Swiss-Prot
    Q8SPQ0
    UniProtKB/TrEMBL
    A0A452DPW1
    Related
    ENSCHIP00000001773.1, ENSCHIT00000004932.1
    Conserved Domains (2) summary
    cd02872
    Location:24 → 380
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00636
    Location:23 → 357
    Glyco_18; Glyco_18 domain

RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030823.1 Reference ASM170441v1 Primary Assembly

    Range
    343308..355619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005690369.3 → XP_005690426.2  chitinase-3-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A452DPW1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SPQ0.1 GenPept UniProtKB/Swiss-Prot:Q8SPQ0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials